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survsim - Simulation of Simple and Complex Survival Data

Simulation of simple and complex survival data including recurrent and multiple events and competing risks. See Moriña D, Navarro A. (2014) <doi:10.18637/jss.v059.i02> and Moriña D, Navarro A. (2017) <doi:10.1080/03610918.2016.1175621>.

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2.69 score 49 scripts 397 downloads

hermite - Generalized Hermite Distribution

Probability functions and other utilities for the generalized Hermite distribution.

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1.48 score 1 dependents 6 scripts 214 downloads

mSimCC - Micro Simulation Model for Cervical Cancer Prevention

Micro simulation model to reproduce natural history of cervical cancer and cost-effectiveness evaluation of prevention strategies. See Georgalis L, de Sanjose S, Esnaola M, Bosch F X, Diaz M (2016) <doi:10.1097/CEJ.0000000000000202> for more details.

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1.30 score 2 stars 196 downloads

MisRepARMA - Misreported Time Series Analysis

Provides a simple and trustworthy methodology for the analysis of misreported continuous time series using either a frequentist (bootstrap-based EM algorithm) or a Bayesian (MCMC via JAGS) approach. The frequentist method is described in Morina et al. (2021) <doi:10.1038/s41598-021-02620-5>. The Bayesian extension fits the same ARMA model with misreporting structure using a full posterior distribution, providing credible intervals and DIC for model comparison, as described in Morina et al. (2024) <doi:10.1101/2024.02.26.24303373>.

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jagscpp

1.00 score 212 downloads

bayesZIB - Bayesian Zero-Inflated Bernoulli Regression Model

Fits a Bayesian zero-inflated Bernoulli regression model handling (potentially) different covariates for the zero-inflated and non zero-inflated parts. See Moriña D, Puig P, Navarro A. (2021) <doi:10.1186/s12874-021-01427-2>.

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cpp

1.00 score 263 downloads

miRecSurv - Left-Censored Recurrent Events Survival Models

Fitting recurrent events survival models for left-censored data with multiple imputation of the number of previous episodes. See Hernández-Herrera G, Moriña D, Navarro A. (2020) <arXiv:2007.15031>.

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1.00 score 1 scripts 181 downloads

radir - Inverse-Regression Estimation of Radioactive Doses

Radioactive doses estimation using individual chromosomal aberrations information. See Higueras M, Puig P, Ainsbury E, Rothkamm K. (2015) <doi:10.1088/0952-4746/35/3/557>.

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1.00 score 4 scripts 162 downloads

linERR - Linear Excess Relative Risk Model

Fits a linear excess relative risk model by maximum likelihood, possibly including several variables and allowing for lagged exposures.

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1.00 score 2 scripts 144 downloads